MotDB


EBI-Roadshow の変更点


[[Japanese page>EBI-Roadshow-jp]]

** EBI Roadshow at DBCLS [#a5d69663]

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The purpose of the roadshow is to train experimental biologists how to make the most of some of Europe's most widely used public biological databases, such as [[Ensembl>http://www.ensembl.org/]], [[ArrayExpress>http://www.ebi.ac.uk/arrayexpress/]], [[BioMart>http://www.biomart.org/]], [[Expression Atlas>http://www.ebi.ac.uk/gxa/]] and [[Reactome>http://www.reactome.org/]]. The roadshow combines presentations and hands-on practical sessions. Trainees are guided through the selected databases and tools by expert trainers from the European Bioinformatics Institute ([[EBI>http://www.ebi.ac.uk/]]), the Swiss Institute of Bioinformatics ([[SBI>http://www.isb-sib.ch/]]), the European Patent Office ([[EPO>http://www.epo.org/]]) and the [[BRENDA>http://www.brenda-enzymes.org/]] project. More information is available on the [[Bioinformatics Roadshow website>http://www.ebi.ac.uk/training/roadshow/]].

:Date| 5(Mon)/6(Tue) September 2011 &br;
//Please note: Schedule is subject to change depending on the rolling blackouts.
:Venue| [[Database Center for Life Science>http://dbcls.rois.ac.jp/en/directions]](Faculty of Engineering Bldg.12, The University of Tokyo, 2-11-16 Yayoi, Bunkyo-ku, Tokyo)
:Enrollment limit| 24
:Registration fee| Free
:Lunch| We will provide light meals for participants.
:PCs| Participants will be able to use PCs (Macbook) provided by DBCLS.
:Banquet (optional)| 5 September 17:30~ (3,000 Yen)


:Registration (closed)|
Deadline: 8 August 2011 &br;
// EBI roadshow at DBCLS registration form - closed
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A successful registration will be followed by a confirmation e-mail. Should you not receive the confirmation e-mail, please contact us.

//---Registration form is closed. Thank you for many applications.



:Contact address (Send inquiries in Japanese or English)|
EBI-roadshow at dbcls.rois.ac.jp


:Organisers| 
European Molecular Biology Laboratory - European Bioinformatics Institute ([[EMBL-EBI>http://www.ebi.ac.uk/]]) &br;
DNA Data Bank of Japan ([[DDBJ>http://www.ddbj.nig.ac.jp/index-e.html]]), National Institute of Genetics ([[NIG>http://www.nig.ac.jp/index-e.html]]), Research Organization of Information and Systems ([[ROIS>http://www.rois.ac.jp/english/index.html]]) &br;
Database Center for Life Science ([[DBCLS>http://dbcls.rois.ac.jp/en/]]), [[ROIS>http://www.rois.ac.jp/english/index.html]]
:Co-organiser|
National Bioscience Database Center ([[NBDC>http://biosciencedbc.jp/?lng=en]]), Japan Science and Technology Agency ([[JST>http://www.jst.go.jp/EN/index.html]])


** Program [#vfd32422]
:Day 1: Access to Genes and Genomes with Ensembl (Jana Vandrovcova) [[Lectures and exercises movie>http://togotv.dbcls.jp/20110905.html#p01]]|
:Day 1: Access to Genes and Genomes with Ensembl (Jana Vandrovcova) 【[[Lectures and exercises movie>http://togotv.dbcls.jp/20110905.html#p01]]】|
&color(white){0};9:00 - &color(white){0};9:15 Welcome remarks from the organizers &br;
&color(white){0};9:15 - &color(white){0};9:45 Introduction to [[EBI>http://www.ebi.ac.uk/]]: overview of most relevant databases (Lecture) &br;
&color(white){0};9:45 - 11:15 Origin, goals, data and analysis in the [[Ensembl>http://www.ensembl.org/]] project Website Walkthrough &br;
11:15 - 11:30 Coffee Break &br;
11:30 - 12:15 [[Ensembl>http://www.ensembl.org/]] exercises &br; 
&br;
12:15 - 13:15 Lunch &br;
&br;
13:15 - 14:15 Retrieving datasets using the data mining tool [[BioMart>http://www.biomart.org/]] (Lecture and exercises) &br;
14:15 - 15:15 Comparative genomics and proteomics: orthologues, protein families, whole genome alignments and syntenic regions (Lecture and exercises) &br;
15:15 - 15:30 Coffee break &br;
15:30 - 16:30 Variations: Single nucleotide polymorphisms in [[Ensembl>http://www.ensembl.org/]], comparison of strains, breeds, individuals using the browser and [[BioMart>http://www.biomart.org/]] (Lecture and exercises) &br;
16:30 - 17:15 Case Study Exercises, or browse your own gene or region

:Day 2: Transcriptomics and Pathways (James Watson) [[Lectures and exercises movie>http://togotv.dbcls.jp/20110906.html#p01]]|
:Day 2: Transcriptomics and Pathways (James Watson) 【[[Lectures and exercises movie>http://togotv.dbcls.jp/20110906.html#p01]]】|
&color(white){0};9:00 - 10:30 Functional Genomics resources at the EBI: [[ArrayExpress>http://www.ebi.ac.uk/arrayexpress/]] and [[Expression Atlas>http://www.ebi.ac.uk/gxa/]] (Lecture) &br;
10:30 - 10:45 Coffee break &br;
10:45 - 12:30 [[ArrayExpress>http://www.ebi.ac.uk/arrayexpress/]]/[[Atlas>http://www.ebi.ac.uk/gxa/]] exercises &br;
&br;
12:30 - 13:30 Lunch &br;
&br;
13:30 - 15:30 [[Reactome>http://www.reactome.org/]]: a curated biological pathway database (Lecture and hands on) &br;
15:30 - 15:45 Coffee break &br;
15:45 - 17:00 More exercises & Questions &br;



** Other EBI Roadshows in Japan [#sb64ea44]
&color(white){00/0};7 September 2011 Showa Pharmaceutical University, Tokyo &br;
&color(white){00};8/9 September 2011 RIKEN, Yokohama &br;
12/13 September 2011 Osaka University, Osaka &br;
//15/16 September 2011 CiRA, Kyoto &br;
15/16 September 2011 OIST, Okinawa

For details, please visit http://www.ebi.ac.uk/training/roadshow/110905_Japan.html

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